Loop J6_8PNN

3D structure

PDB id: 8PNN (explore in PDB, NAKB, or RNA 3D Hub)
Description: 80S yeast ribosome in complex with Bromolissoclimide
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å

Loop

Sequence: GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
Length: 42 nucleotides
Bulged bases: 8PNN|1|AR|A|67, 8PNN|1|AR|U|329, 8PNN|1|AT|U|34
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8PNN|1|AR|G|22
8PNN|1|AR|A|23
8PNN|1|AR|G|24
8PNN|1|AR|U|25
8PNN|1|AR|A|26
8PNN|1|AR|C|27
*
8PNN|1|AR|G|58
8PNN|1|AR|G|59
8PNN|1|AR|A|60
8PNN|1|AR|A|61
8PNN|1|AR|A|62
8PNN|1|AR|A|63
8PNN|1|AR|G|64
8PNN|1|AR|A|65
8PNN|1|AR|A|66
8PNN|1|AR|A|67
8PNN|1|AR|C|68
*
8PNN|1|AR|G|75
8PNN|1|AR|G|76
8PNN|1|AR|A|77
8PNN|1|AR|U|78
8PNN|1|AR|U|79
*
8PNN|1|AR|A|106
8PNN|1|AR|A|107
8PNN|1|AR|A|108
8PNN|1|AR|A|109
8PNN|1|AR|G|110
*
8PNN|1|AR|C|321
8PNN|1|AR|U|322
8PNN|1|AR|A|323
8PNN|1|AR|A|324
8PNN|1|AR|A|325
8PNN|1|AR|U|326
8PNN|1|AR|A|327
8PNN|1|AR|U|328
8PNN|1|AR|U|329
8PNN|1|AR|G|330
8PNN|1|AR|G|331
*
8PNN|1|AT|C|32
8PNN|1|AT|A|33
8PNN|1|AT|U|34
8PNN|1|AT|C|35

Current chains

Chain AR: 25S ribosomal RNA
Chain AT: 5.8S ribosomal RNA

Nearby chains

Chain CF: 60S ribosomal protein L4-A
Chain CN: 60S ribosomal protein L13-A
Chain CP: 60S ribosomal protein L15-A
Chain DJ: 60S ribosomal protein L35-A
Chain DK: 60S ribosomal protein L36-A
Chain DL: 60S ribosomal protein L37-A

J6_8PNN_003