J6_8PVA_001

3D structure

PDB id

8PVA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial ribosome determined by cryoEM at 100 keV

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8PVA|1|a|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PVA|1|a|G|45
8PVA|1|a|G|46
*
8PVA|1|a|C|179
8PVA|1|a|G|180
8PVA|1|a|A|181
8PVA|1|a|A|182
8PVA|1|a|C|183
*
8PVA|1|a|G|214
8PVA|1|a|G|215
8PVA|1|a|A|216
8PVA|1|a|A|217
8PVA|1|a|A|218
8PVA|1|a|A|219
8PVA|1|a|G|220
8PVA|1|a|A|221
8PVA|1|a|A|222
8PVA|1|a|A|223
8PVA|1|a|U|224
*
8PVA|1|a|A|231
8PVA|1|a|G|232
8PVA|1|a|A|233
8PVA|1|a|U|234
8PVA|1|a|U|235
*
8PVA|1|a|A|262
8PVA|1|a|G|263
8PVA|1|a|C|264
8PVA|1|a|A|265
8PVA|1|a|G|266
*
8PVA|1|a|C|426
8PVA|1|a|U|427
8PVA|1|a|A|428
8PVA|1|a|A|429
8PVA|1|a|A|430
8PVA|1|a|U|431
8PVA|1|a|A|432
8PVA|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34