Loop J6_8PVK

3D structure

PDB id: 8PVK (explore in PDB, NAKB, or RNA 3D Hub)
Description: Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.55 Å

Loop

Sequence: GAGGAC*GGAAAAGAAAC*GGAUU*AACAG*CUAAAUACCGG*CAUC
Length: 42 nucleotides
Bulged bases: 8PVK|1|C1|A|68, 8PVK|1|C1|C|322, 8PVK|1|C2|U|34
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8PVK|1|C1|G|23
8PVK|1|C1|A|24
8PVK|1|C1|G|25
8PVK|1|C1|G|26
8PVK|1|C1|A|27
8PVK|1|C1|C|28
*
8PVK|1|C1|G|59
8PVK|1|C1|G|60
8PVK|1|C1|A|61
8PVK|1|C1|A|62
8PVK|1|C1|A|63
8PVK|1|C1|A|64
8PVK|1|C1|G|65
8PVK|1|C1|A|66
8PVK|1|C1|A|67
8PVK|1|C1|A|68
8PVK|1|C1|C|69
*
8PVK|1|C1|G|76
8PVK|1|C1|G|77
8PVK|1|C1|A|78
8PVK|1|C1|U|79
8PVK|1|C1|U|80
*
8PVK|1|C1|A|107
8PVK|1|C1|A|108
8PVK|1|C1|C|109
8PVK|1|C1|A|110
8PVK|1|C1|G|111
*
8PVK|1|C1|C|314
8PVK|1|C1|U|315
8PVK|1|C1|A|316
8PVK|1|C1|A|317
8PVK|1|C1|A|318
8PVK|1|C1|U|319
8PVK|1|C1|A|320
8PVK|1|C1|C|321
8PVK|1|C1|C|322
8PVK|1|C1|G|323
8PVK|1|C1|G|324
*
8PVK|1|C2|C|32
8PVK|1|C2|A|33
8PVK|1|C2|U|34
8PVK|1|C2|C|35

Current chains

Chain C1: 26S rRNA
Chain C2: 5.8S rRNA

Nearby chains

Chain LC: 60S ribosomal protein L4-like protein
Chain LL: 60S ribosomal protein L13
Chain LN: Ribosomal protein L15
Chain Lh: dolichyl-diphosphooligosaccharide--protein glycotransferase
Chain Li: 60S ribosomal protein L36
Chain Lj: Ribosomal protein L37

J6_8PVK_001