J6_8PVL_001
3D structure
- PDB id
- 8PVL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.19 Å
Loop
- Sequence
- GAGGAC*GGAAAAGAAAC*GGAUU*AACAG*CUAAAUACCGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 8PVL|1|C1|A|68, 8PVL|1|C1|C|322, 8PVL|1|C2|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8PVL|1|C1|G|23
8PVL|1|C1|A|24
8PVL|1|C1|G|25
8PVL|1|C1|G|26
8PVL|1|C1|A|27
8PVL|1|C1|C|28
*
8PVL|1|C1|G|59
8PVL|1|C1|G|60
8PVL|1|C1|A|61
8PVL|1|C1|A|62
8PVL|1|C1|A|63
8PVL|1|C1|A|64
8PVL|1|C1|G|65
8PVL|1|C1|A|66
8PVL|1|C1|A|67
8PVL|1|C1|A|68
8PVL|1|C1|C|69
*
8PVL|1|C1|G|76
8PVL|1|C1|G|77
8PVL|1|C1|A|78
8PVL|1|C1|U|79
8PVL|1|C1|U|80
*
8PVL|1|C1|A|107
8PVL|1|C1|A|108
8PVL|1|C1|C|109
8PVL|1|C1|A|110
8PVL|1|C1|G|111
*
8PVL|1|C1|C|314
8PVL|1|C1|U|315
8PVL|1|C1|A|316
8PVL|1|C1|A|317
8PVL|1|C1|A|318
8PVL|1|C1|U|319
8PVL|1|C1|A|320
8PVL|1|C1|C|321
8PVL|1|C1|C|322
8PVL|1|C1|G|323
8PVL|1|C1|G|324
*
8PVL|1|C2|C|32
8PVL|1|C2|A|33
8PVL|1|C2|U|34
8PVL|1|C2|C|35
Current chains
- Chain C1
- 26S rRNA
- Chain C2
- 5.8S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4-like protein
- Chain LL
- 60S ribosomal protein L13
- Chain LN
- Ribosomal protein L15
- Chain Lh
- dolichyl-diphosphooligosaccharide--protein glycotransferase
- Chain Li
- 60S ribosomal protein L36
- Chain Lj
- Ribosomal protein L37
Coloring options: