J6_8QOA_001

3D structure

PDB id

8QOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SecM-stalled Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8QOA|1|a|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QOA|1|a|G|45
8QOA|1|a|G|46
*
8QOA|1|a|C|179
8QOA|1|a|G|180
8QOA|1|a|A|181
8QOA|1|a|A|182
8QOA|1|a|C|183
*
8QOA|1|a|G|214
8QOA|1|a|G|215
8QOA|1|a|A|216
8QOA|1|a|A|217
8QOA|1|a|A|218
8QOA|1|a|A|219
8QOA|1|a|G|220
8QOA|1|a|A|221
8QOA|1|a|A|222
8QOA|1|a|A|223
8QOA|1|a|U|224
*
8QOA|1|a|A|231
8QOA|1|a|G|232
8QOA|1|a|A|233
8QOA|1|a|U|234
8QOA|1|a|U|235
*
8QOA|1|a|A|262
8QOA|1|a|G|263
8QOA|1|a|C|264
8QOA|1|a|A|265
8QOA|1|a|G|266
*
8QOA|1|a|C|426
8QOA|1|a|U|427
8QOA|1|a|A|428
8QOA|1|a|A|429
8QOA|1|a|A|430
8QOA|1|a|U|431
8QOA|1|a|A|432
8QOA|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34