Loop J6_8QOI

3D structure

PDB id: 8QOI (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.9 Å

Loop

Sequence: (PSU)UGA*UUUG*CA*(OMU)(OMG)UC*GCCUUACGAUCC*(OMG)GUGUCAGAAAA
Length: 38 nucleotides
Bulged bases: 8QOI|1|L5|G|3922, 8QOI|1|L5|C|4337, 8QOI|1|L5|A|4376, 8QOI|1|L5|A|4378, 8QOI|1|L5|A|4379
QA status: Modified nucleotides: PSU, OMU, OMG

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8QOI|1|L5|PSU|3920
8QOI|1|L5|U|3921
8QOI|1|L5|G|3922
8QOI|1|L5|A|3923
*
8QOI|1|L5|U|4188
8QOI|1|L5|U|4189
8QOI|1|L5|U|4190
8QOI|1|L5|G|4191
*
8QOI|1|L5|C|4204
8QOI|1|L5|A|4205
*
8QOI|1|L5|OMU|4227
8QOI|1|L5|OMG|4228
8QOI|1|L5|U|4229
8QOI|1|L5|C|4230
*
8QOI|1|L5|G|4331
8QOI|1|L5|C|4332
8QOI|1|L5|C|4333
8QOI|1|L5|U|4334
8QOI|1|L5|U|4335
8QOI|1|L5|A|4336
8QOI|1|L5|C|4337
8QOI|1|L5|G|4338
8QOI|1|L5|A|4339
8QOI|1|L5|U|4340
8QOI|1|L5|C|4341
8QOI|1|L5|C|4342
*
8QOI|1|L5|OMG|4370
8QOI|1|L5|G|4371
8QOI|1|L5|U|4372
8QOI|1|L5|G|4373
8QOI|1|L5|U|4374
8QOI|1|L5|C|4375
8QOI|1|L5|A|4376
8QOI|1|L5|G|4377
8QOI|1|L5|A|4378
8QOI|1|L5|A|4379
8QOI|1|L5|A|4380
8QOI|1|L5|A|4381

Current chains

Chain L5: 28S rRNA (3773-MER)

Nearby chains

Chain LA: 60S ribosomal protein L8
Chain LN: 60S ribosomal protein L15
Chain LQ: 60S ribosomal protein L18
Chain LT: 60S ribosomal protein L21
Chain La: Large ribosomal subunit protein uL15
Chain Lb: 60S ribosomal protein L29
Chain Lo: 60S ribosomal protein L36a

J6_8QOI_003