J6_8R6C_001

3D structure

PDB id

8R6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8R6C|1|a|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8R6C|1|a|G|45
8R6C|1|a|G|46
*
8R6C|1|a|C|179
8R6C|1|a|G|180
8R6C|1|a|A|181
8R6C|1|a|A|182
8R6C|1|a|C|183
*
8R6C|1|a|G|214
8R6C|1|a|G|215
8R6C|1|a|A|216
8R6C|1|a|A|217
8R6C|1|a|A|218
8R6C|1|a|A|219
8R6C|1|a|G|220
8R6C|1|a|A|221
8R6C|1|a|A|222
8R6C|1|a|A|223
8R6C|1|a|U|224
*
8R6C|1|a|A|231
8R6C|1|a|G|232
8R6C|1|a|A|233
8R6C|1|a|U|234
8R6C|1|a|U|235
*
8R6C|1|a|A|262
8R6C|1|a|G|263
8R6C|1|a|C|264
8R6C|1|a|A|265
8R6C|1|a|G|266
*
8R6C|1|a|C|426
8R6C|1|a|U|427
8R6C|1|a|A|428
8R6C|1|a|A|429
8R6C|1|a|A|430
8R6C|1|a|U|431
8R6C|1|a|A|432
8R6C|1|a|C|433

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34