J6_8RD8_001
3D structure
- PDB id
- 8RD8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- GG*CGAAC*GGAAAAGACAU*AGAUU*AGAAG*CUAAAUAC
- Length
- 36 nucleotides
- Bulged bases
- 8RD8|1|Z2|A|220
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8RD8|1|Z2|G|52
8RD8|1|Z2|G|53
*
8RD8|1|Z2|C|176
8RD8|1|Z2|G|177
8RD8|1|Z2|A|178
8RD8|1|Z2|A|179
8RD8|1|Z2|C|180
*
8RD8|1|Z2|G|211
8RD8|1|Z2|G|212
8RD8|1|Z2|A|213
8RD8|1|Z2|A|214
8RD8|1|Z2|A|215
8RD8|1|Z2|A|216
8RD8|1|Z2|G|217
8RD8|1|Z2|A|218
8RD8|1|Z2|C|219
8RD8|1|Z2|A|220
8RD8|1|Z2|U|221
*
8RD8|1|Z2|A|228
8RD8|1|Z2|G|229
8RD8|1|Z2|A|230
8RD8|1|Z2|U|231
8RD8|1|Z2|U|232
*
8RD8|1|Z2|A|259
8RD8|1|Z2|G|260
8RD8|1|Z2|A|261
8RD8|1|Z2|A|262
8RD8|1|Z2|G|263
*
8RD8|1|Z2|C|409
8RD8|1|Z2|U|410
8RD8|1|Z2|A|411
8RD8|1|Z2|A|412
8RD8|1|Z2|A|413
8RD8|1|Z2|U|414
8RD8|1|Z2|A|415
8RD8|1|Z2|C|416
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain Ba
- Large ribosomal subunit protein bL34
Coloring options: