J6_8RJB_001
3D structure
- PDB id
- 8RJB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.69243 Å
Loop
- Sequence
- GGCGAC*GGAAAAGAAAC*GGAUU*AAGAG*CUAAAUAC*GUC
- Length
- 38 nucleotides
- Bulged bases
- 8RJB|1|K|A|66, 8RJB|1|v|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8RJB|1|K|G|21
8RJB|1|K|G|22
8RJB|1|K|C|23
8RJB|1|K|G|24
8RJB|1|K|A|25
8RJB|1|K|C|26
*
8RJB|1|K|G|57
8RJB|1|K|G|58
8RJB|1|K|A|59
8RJB|1|K|A|60
8RJB|1|K|A|61
8RJB|1|K|A|62
8RJB|1|K|G|63
8RJB|1|K|A|64
8RJB|1|K|A|65
8RJB|1|K|A|66
8RJB|1|K|C|67
*
8RJB|1|K|G|74
8RJB|1|K|G|75
8RJB|1|K|A|76
8RJB|1|K|U|77
8RJB|1|K|U|78
*
8RJB|1|K|A|105
8RJB|1|K|A|106
8RJB|1|K|G|107
8RJB|1|K|A|108
8RJB|1|K|G|109
*
8RJB|1|K|C|332
8RJB|1|K|U|333
8RJB|1|K|A|334
8RJB|1|K|A|335
8RJB|1|K|A|336
8RJB|1|K|U|337
8RJB|1|K|A|338
8RJB|1|K|C|339
*
8RJB|1|v|G|33
8RJB|1|v|U|34
8RJB|1|v|C|35
Current chains
- Chain K
- 28S rRNA
- Chain v
- 5.8S rRNA
Nearby chains
- Chain L
- 60S ribosomal protein L13
- Chain N
- Ribosomal protein L15
- Chain h
- 60S ribosomal protein L35
- Chain i
- 60S ribosomal protein L36
- Chain j
- Ribosomal protein L37
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