J6_8RJB_003
3D structure
- PDB id
- 8RJB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.69243 Å
Loop
- Sequence
- UUGA*UUUG*CA*UGUC*GCCUCACGAUCC*GGUGUCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 8RJB|1|K|G|3922, 8RJB|1|K|C|4337, 8RJB|1|K|A|4376, 8RJB|1|K|A|4378, 8RJB|1|K|A|4379
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8RJB|1|K|U|3920
8RJB|1|K|U|3921
8RJB|1|K|G|3922
8RJB|1|K|A|3923
*
8RJB|1|K|U|4188
8RJB|1|K|U|4189
8RJB|1|K|U|4190
8RJB|1|K|G|4191
*
8RJB|1|K|C|4204
8RJB|1|K|A|4205
*
8RJB|1|K|U|4227
8RJB|1|K|G|4228
8RJB|1|K|U|4229
8RJB|1|K|C|4230
*
8RJB|1|K|G|4331
8RJB|1|K|C|4332
8RJB|1|K|C|4333
8RJB|1|K|U|4334
8RJB|1|K|C|4335
8RJB|1|K|A|4336
8RJB|1|K|C|4337
8RJB|1|K|G|4338
8RJB|1|K|A|4339
8RJB|1|K|U|4340
8RJB|1|K|C|4341
8RJB|1|K|C|4342
*
8RJB|1|K|G|4370
8RJB|1|K|G|4371
8RJB|1|K|U|4372
8RJB|1|K|G|4373
8RJB|1|K|U|4374
8RJB|1|K|C|4375
8RJB|1|K|A|4376
8RJB|1|K|G|4377
8RJB|1|K|A|4378
8RJB|1|K|A|4379
8RJB|1|K|A|4380
8RJB|1|K|A|4381
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain A
- Ribosomal protein L8
- Chain N
- Ribosomal protein L15
- Chain Q
- Ribosomal protein L26
- Chain T
- 60S ribosomal protein L21
- Chain a
- 60S ribosomal protein L27a
- Chain b
- 60S ribosomal protein L29
- Chain o
- 60S ribosomal protein L36a-like
- Chain q
- Transfer RNA; tRNA
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