J6_8RJD_002
3D structure
- PDB id
- 8RJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78574 Å
Loop
- Sequence
- CGAG*CGCAA*UGAAG*CGAG*CGG*CACGAG
- Length
- 27 nucleotides
- Bulged bases
- 8RJD|1|K|C|1501, 8RJD|1|K|G|1502
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8RJD|1|K|C|1352
8RJD|1|K|G|1353
8RJD|1|K|A|1354
8RJD|1|K|G|1355
*
8RJD|1|K|C|1384
8RJD|1|K|G|1385
8RJD|1|K|C|1386
8RJD|1|K|A|1387
8RJD|1|K|A|1388
*
8RJD|1|K|U|1395
8RJD|1|K|G|1396
8RJD|1|K|A|1397
8RJD|1|K|A|1398
8RJD|1|K|G|1399
*
8RJD|1|K|C|1418
8RJD|1|K|G|1419
8RJD|1|K|A|1420
8RJD|1|K|G|1421
*
8RJD|1|K|C|1464
8RJD|1|K|G|1465
8RJD|1|K|G|1466
*
8RJD|1|K|C|1499
8RJD|1|K|A|1500
8RJD|1|K|C|1501
8RJD|1|K|G|1502
8RJD|1|K|A|1503
8RJD|1|K|G|1504
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain C
- Large ribosomal subunit protein uL4
- Chain L
- 60S ribosomal protein L13
- Chain Q
- Ribosomal protein L18
- Chain a
- 60S ribosomal protein L27a
- Chain b
- 60S ribosomal protein L29
- Chain i
- 60S ribosomal protein L36
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