J6_8RL2_002

3D structure

PDB id

8RL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 5

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

CGAG*CGCAA*UGAAG*CGAG*CGG*CACGAG

Length

27 nucleotides

Bulged bases

8RL2|1|L5|C|1501, 8RL2|1|L5|G|1502

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RL2|1|L5|C|1352
8RL2|1|L5|G|1353
8RL2|1|L5|A|1354
8RL2|1|L5|G|1355
*
8RL2|1|L5|C|1384
8RL2|1|L5|G|1385
8RL2|1|L5|C|1386
8RL2|1|L5|A|1387
8RL2|1|L5|A|1388
*
8RL2|1|L5|U|1395
8RL2|1|L5|G|1396
8RL2|1|L5|A|1397
8RL2|1|L5|A|1398
8RL2|1|L5|G|1399
*
8RL2|1|L5|C|1418
8RL2|1|L5|G|1419
8RL2|1|L5|A|1420
8RL2|1|L5|G|1421
*
8RL2|1|L5|C|1464
8RL2|1|L5|G|1465
8RL2|1|L5|G|1466
*
8RL2|1|L5|C|1499
8RL2|1|L5|A|1500
8RL2|1|L5|C|1501
8RL2|1|L5|G|1502
8RL2|1|L5|A|1503
8RL2|1|L5|G|1504

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LL

60S ribosomal protein L13

Chain LQ

60S ribosomal protein L18

Chain La

60S ribosomal protein L27a

Chain Li

60S ribosomal protein L36