J6_8RL2_003
3D structure
- PDB id
- 8RL2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human pre-60S - State 5
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.84 Å
Loop
- Sequence
- GACUG*CAAAG*UGAUUUCUG*CG*CUUAAGGUAGC*GAUGAAC
- Length
- 39 nucleotides
- Bulged bases
- 8RL2|1|L5|U|3697, 8RL2|1|L5|U|3772, 8RL2|1|L5|U|3773, 8RL2|1|L5|A|3774, 8RL2|1|L5|U|3778, 8RL2|1|L5|A|3779, 8RL2|1|L5|A|3821, 8RL2|1|L5|U|3822, 8RL2|1|L5|G|3823
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8RL2|1|L5|G|3634
8RL2|1|L5|A|3635
8RL2|1|L5|C|3636
8RL2|1|L5|U|3637
8RL2|1|L5|G|3638
*
8RL2|1|L5|C|3650
8RL2|1|L5|A|3651
8RL2|1|L5|A|3652
8RL2|1|L5|A|3653
8RL2|1|L5|G|3654
*
8RL2|1|L5|U|3690
8RL2|1|L5|G|3691
8RL2|1|L5|A|3692
8RL2|1|L5|U|3693
8RL2|1|L5|U|3694
8RL2|1|L5|U|3695
8RL2|1|L5|C|3696
8RL2|1|L5|U|3697
8RL2|1|L5|G|3698
*
8RL2|1|L5|C|3752
8RL2|1|L5|G|3753
*
8RL2|1|L5|C|3771
8RL2|1|L5|U|3772
8RL2|1|L5|U|3773
8RL2|1|L5|A|3774
8RL2|1|L5|A|3775
8RL2|1|L5|G|3776
8RL2|1|L5|G|3777
8RL2|1|L5|U|3778
8RL2|1|L5|A|3779
8RL2|1|L5|G|3780
8RL2|1|L5|C|3781
*
8RL2|1|L5|G|3820
8RL2|1|L5|A|3821
8RL2|1|L5|U|3822
8RL2|1|L5|G|3823
8RL2|1|L5|A|3824
8RL2|1|L5|A|3825
8RL2|1|L5|C|3826
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain CB
- Nucleolar GTP-binding protein 2
- Chain CJ
- Ribosome production factor 2 homolog
- Chain LA
- 60S ribosomal protein L8
- Chain Lp
- 60S ribosomal protein L37a
Coloring options: