J6_8RPY_001

3D structure

PDB id

8RPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8RPY|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RPY|1|A|G|45
8RPY|1|A|G|46
*
8RPY|1|A|C|179
8RPY|1|A|G|180
8RPY|1|A|A|181
8RPY|1|A|A|182
8RPY|1|A|C|183
*
8RPY|1|A|G|214
8RPY|1|A|G|215
8RPY|1|A|A|216
8RPY|1|A|A|217
8RPY|1|A|A|218
8RPY|1|A|A|219
8RPY|1|A|G|220
8RPY|1|A|A|221
8RPY|1|A|A|222
8RPY|1|A|A|223
8RPY|1|A|U|224
*
8RPY|1|A|A|231
8RPY|1|A|G|232
8RPY|1|A|A|233
8RPY|1|A|U|234
8RPY|1|A|U|235
*
8RPY|1|A|A|262
8RPY|1|A|G|263
8RPY|1|A|C|264
8RPY|1|A|A|265
8RPY|1|A|G|266
*
8RPY|1|A|C|426
8RPY|1|A|U|427
8RPY|1|A|A|428
8RPY|1|A|A|429
8RPY|1|A|A|430
8RPY|1|A|U|431
8RPY|1|A|A|432
8RPY|1|A|C|433

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34