J6_8RPZ_001
3D structure
- PDB id
- 8RPZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.44 Å
Loop
- Sequence
- GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC
- Length
- 36 nucleotides
- Bulged bases
- 8RPZ|1|A|A|223
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8RPZ|1|A|G|45
8RPZ|1|A|G|46
*
8RPZ|1|A|C|179
8RPZ|1|A|G|180
8RPZ|1|A|A|181
8RPZ|1|A|A|182
8RPZ|1|A|C|183
*
8RPZ|1|A|G|214
8RPZ|1|A|G|215
8RPZ|1|A|A|216
8RPZ|1|A|A|217
8RPZ|1|A|A|218
8RPZ|1|A|A|219
8RPZ|1|A|G|220
8RPZ|1|A|A|221
8RPZ|1|A|A|222
8RPZ|1|A|A|223
8RPZ|1|A|U|224
*
8RPZ|1|A|A|231
8RPZ|1|A|G|232
8RPZ|1|A|A|233
8RPZ|1|A|U|234
8RPZ|1|A|U|235
*
8RPZ|1|A|A|262
8RPZ|1|A|G|263
8RPZ|1|A|C|264
8RPZ|1|A|A|265
8RPZ|1|A|G|266
*
8RPZ|1|A|C|426
8RPZ|1|A|U|427
8RPZ|1|A|A|428
8RPZ|1|A|A|429
8RPZ|1|A|A|430
8RPZ|1|A|U|431
8RPZ|1|A|A|432
8RPZ|1|A|C|433
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein bL34
Coloring options: