J6_8RPZ_002

3D structure

PDB id

8RPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA

Length

41 nucleotides

Bulged bases

8RPZ|1|A|U|2076, 8RPZ|1|A|A|2388, 8RPZ|1|A|U|2390, 8RPZ|1|A|G|2428, 8RPZ|1|A|A|2430, 8RPZ|1|A|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RPZ|1|A|U|2074
8RPZ|1|A|U|2075
8RPZ|1|A|U|2076
8RPZ|1|A|A|2077
*
8RPZ|1|A|U|2243
8RPZ|1|A|U|2244
8RPZ|1|A|U|2245
8RPZ|1|A|G|2246
*
8RPZ|1|A|C|2258
8RPZ|1|A|U|2259
*
8RPZ|1|A|A|2281
8RPZ|1|A|G|2282
8RPZ|1|A|C|2283
8RPZ|1|A|A|2284
*
8RPZ|1|A|U|2384
8RPZ|1|A|C|2385
8RPZ|1|A|A|2386
8RPZ|1|A|U|2387
8RPZ|1|A|A|2388
8RPZ|1|A|G|2389
8RPZ|1|A|U|2390
8RPZ|1|A|G|2391
8RPZ|1|A|A|2392
8RPZ|1|A|U|2393
8RPZ|1|A|C|2394
8RPZ|1|A|C|2395
*
8RPZ|1|A|G|2421
8RPZ|1|A|C|2422
8RPZ|1|A|U|2423
8RPZ|1|A|C|2424
8RPZ|1|A|A|2425
8RPZ|1|A|A|2426
8RPZ|1|A|C|2427
8RPZ|1|A|G|2428
8RPZ|1|A|G|2429
8RPZ|1|A|A|2430
8RPZ|1|A|U|2431
8RPZ|1|A|A|2432
8RPZ|1|A|A|2433
8RPZ|1|A|A|2434
8RPZ|1|A|A|2435

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL33

Chain 3

Large ribosomal subunit protein bL35

Chain C

Large ribosomal subunit protein uL2

Chain L

Large ribosomal subunit protein uL15

Chain W

Large ribosomal subunit protein bL27

Chain X

Large ribosomal subunit protein bL28