J6_8RQ0_001

3D structure

PDB id

8RQ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8RQ0|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RQ0|1|A|G|45
8RQ0|1|A|G|46
*
8RQ0|1|A|C|179
8RQ0|1|A|G|180
8RQ0|1|A|A|181
8RQ0|1|A|A|182
8RQ0|1|A|C|183
*
8RQ0|1|A|G|214
8RQ0|1|A|G|215
8RQ0|1|A|A|216
8RQ0|1|A|A|217
8RQ0|1|A|A|218
8RQ0|1|A|A|219
8RQ0|1|A|G|220
8RQ0|1|A|A|221
8RQ0|1|A|A|222
8RQ0|1|A|A|223
8RQ0|1|A|U|224
*
8RQ0|1|A|A|231
8RQ0|1|A|G|232
8RQ0|1|A|A|233
8RQ0|1|A|U|234
8RQ0|1|A|U|235
*
8RQ0|1|A|A|262
8RQ0|1|A|G|263
8RQ0|1|A|C|264
8RQ0|1|A|A|265
8RQ0|1|A|G|266
*
8RQ0|1|A|C|426
8RQ0|1|A|U|427
8RQ0|1|A|A|428
8RQ0|1|A|A|429
8RQ0|1|A|A|430
8RQ0|1|A|U|431
8RQ0|1|A|A|432
8RQ0|1|A|C|433

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34