J6_8RQ2_001

3D structure

PDB id

8RQ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8RQ2|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RQ2|1|A|G|45
8RQ2|1|A|G|46
*
8RQ2|1|A|C|179
8RQ2|1|A|G|180
8RQ2|1|A|A|181
8RQ2|1|A|A|182
8RQ2|1|A|C|183
*
8RQ2|1|A|G|214
8RQ2|1|A|G|215
8RQ2|1|A|A|216
8RQ2|1|A|A|217
8RQ2|1|A|A|218
8RQ2|1|A|A|219
8RQ2|1|A|G|220
8RQ2|1|A|A|221
8RQ2|1|A|A|222
8RQ2|1|A|A|223
8RQ2|1|A|U|224
*
8RQ2|1|A|A|231
8RQ2|1|A|G|232
8RQ2|1|A|A|233
8RQ2|1|A|U|234
8RQ2|1|A|U|235
*
8RQ2|1|A|A|262
8RQ2|1|A|G|263
8RQ2|1|A|C|264
8RQ2|1|A|A|265
8RQ2|1|A|G|266
*
8RQ2|1|A|C|426
8RQ2|1|A|U|427
8RQ2|1|A|A|428
8RQ2|1|A|A|429
8RQ2|1|A|A|430
8RQ2|1|A|U|431
8RQ2|1|A|A|432
8RQ2|1|A|C|433

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34