J6_8RQ2_002
3D structure
- PDB id
- 8RQ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.44 Å
Loop
- Sequence
- UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 8RQ2|1|A|U|2076, 8RQ2|1|A|A|2388, 8RQ2|1|A|U|2390, 8RQ2|1|A|G|2428, 8RQ2|1|A|A|2430, 8RQ2|1|A|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8RQ2|1|A|U|2074
8RQ2|1|A|U|2075
8RQ2|1|A|U|2076
8RQ2|1|A|A|2077
*
8RQ2|1|A|U|2243
8RQ2|1|A|U|2244
8RQ2|1|A|U|2245
8RQ2|1|A|G|2246
*
8RQ2|1|A|C|2258
8RQ2|1|A|U|2259
*
8RQ2|1|A|A|2281
8RQ2|1|A|G|2282
8RQ2|1|A|C|2283
8RQ2|1|A|A|2284
*
8RQ2|1|A|U|2384
8RQ2|1|A|C|2385
8RQ2|1|A|A|2386
8RQ2|1|A|U|2387
8RQ2|1|A|A|2388
8RQ2|1|A|G|2389
8RQ2|1|A|U|2390
8RQ2|1|A|G|2391
8RQ2|1|A|A|2392
8RQ2|1|A|U|2393
8RQ2|1|A|C|2394
8RQ2|1|A|C|2395
*
8RQ2|1|A|G|2421
8RQ2|1|A|C|2422
8RQ2|1|A|U|2423
8RQ2|1|A|C|2424
8RQ2|1|A|A|2425
8RQ2|1|A|A|2426
8RQ2|1|A|C|2427
8RQ2|1|A|G|2428
8RQ2|1|A|G|2429
8RQ2|1|A|A|2430
8RQ2|1|A|U|2431
8RQ2|1|A|A|2432
8RQ2|1|A|A|2433
8RQ2|1|A|A|2434
8RQ2|1|A|A|2435
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein bL33
- Chain 3
- Large ribosomal subunit protein bL35
- Chain C
- Large ribosomal subunit protein uL2
- Chain L
- Large ribosomal subunit protein uL15
- Chain W
- Large ribosomal subunit protein bL27
- Chain X
- Large ribosomal subunit protein bL28
Coloring options: