J6_8SYL_001

3D structure

PDB id

8SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8SYL|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8SYL|1|A|G|45
8SYL|1|A|G|46
*
8SYL|1|A|C|179
8SYL|1|A|G|180
8SYL|1|A|A|181
8SYL|1|A|A|182
8SYL|1|A|C|183
*
8SYL|1|A|G|214
8SYL|1|A|G|215
8SYL|1|A|A|216
8SYL|1|A|A|217
8SYL|1|A|A|218
8SYL|1|A|A|219
8SYL|1|A|G|220
8SYL|1|A|A|221
8SYL|1|A|A|222
8SYL|1|A|A|223
8SYL|1|A|U|224
*
8SYL|1|A|A|231
8SYL|1|A|G|232
8SYL|1|A|A|233
8SYL|1|A|U|234
8SYL|1|A|U|235
*
8SYL|1|A|A|262
8SYL|1|A|G|263
8SYL|1|A|C|264
8SYL|1|A|A|265
8SYL|1|A|G|266
*
8SYL|1|A|C|426
8SYL|1|A|U|427
8SYL|1|A|A|428
8SYL|1|A|A|429
8SYL|1|A|A|430
8SYL|1|A|U|431
8SYL|1|A|A|432
8SYL|1|A|C|433

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34