J6_8T2X_002
3D structure
- PDB id
- 8T2X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PRE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.46 Å
Loop
- Sequence
- (PSU)UGA*UUUG*CA*UGUC*GCCUAUCGAUCC*GGUGCCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 8T2X|1|A1|G|2418, 8T2X|1|A1|C|2760, 8T2X|1|A1|A|2799, 8T2X|1|A1|A|2801, 8T2X|1|A1|A|2802
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8T2X|1|A1|PSU|2416
8T2X|1|A1|U|2417
8T2X|1|A1|G|2418
8T2X|1|A1|A|2419
*
8T2X|1|A1|U|2611
8T2X|1|A1|U|2612
8T2X|1|A1|U|2613
8T2X|1|A1|G|2614
*
8T2X|1|A1|C|2627
8T2X|1|A1|A|2628
*
8T2X|1|A1|U|2650
8T2X|1|A1|G|2651
8T2X|1|A1|U|2652
8T2X|1|A1|C|2653
*
8T2X|1|A1|G|2754
8T2X|1|A1|C|2755
8T2X|1|A1|C|2756
8T2X|1|A1|U|2757
8T2X|1|A1|A|2758
8T2X|1|A1|U|2759
8T2X|1|A1|C|2760
8T2X|1|A1|G|2761
8T2X|1|A1|A|2762
8T2X|1|A1|U|2763
8T2X|1|A1|C|2764
8T2X|1|A1|C|2765
*
8T2X|1|A1|G|2793
8T2X|1|A1|G|2794
8T2X|1|A1|U|2795
8T2X|1|A1|G|2796
8T2X|1|A1|C|2797
8T2X|1|A1|C|2798
8T2X|1|A1|A|2799
8T2X|1|A1|G|2800
8T2X|1|A1|A|2801
8T2X|1|A1|A|2802
8T2X|1|A1|A|2803
8T2X|1|A1|A|2804
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AA
- 60S ribosomal protein L2-A
- Chain AN
- 60S ribosomal protein L15-A
- Chain AQ
- 60S ribosomal protein L18-A
- Chain AT
- 60S ribosomal protein L21-A
- Chain Aa
- 60S ribosomal protein L28
- Chain Ab
- RPL29 isoform 1
- Chain Ao
- 60S ribosomal protein L42-A
- Chain eI
- Eukaryotic translation initiation factor 5A
Coloring options: