3D structure

PDB id
8T3D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III
Experimental method
ELECTRON MICROSCOPY
Resolution
2.95 Å

Loop

Sequence
(PSU)UGA*UUUG*CA*UGUC*GCCUAUCGAUCC*GGUGCCAGAAAA
Length
38 nucleotides
Bulged bases
8T3D|1|A1|G|2418, 8T3D|1|A1|C|2760, 8T3D|1|A1|A|2799, 8T3D|1|A1|A|2801, 8T3D|1|A1|A|2802, 8T3D|1|A1|A|2803
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8T3D|1|A1|PSU|2416
8T3D|1|A1|U|2417
8T3D|1|A1|G|2418
8T3D|1|A1|A|2419
*
8T3D|1|A1|U|2611
8T3D|1|A1|U|2612
8T3D|1|A1|U|2613
8T3D|1|A1|G|2614
*
8T3D|1|A1|C|2627
8T3D|1|A1|A|2628
*
8T3D|1|A1|U|2650
8T3D|1|A1|G|2651
8T3D|1|A1|U|2652
8T3D|1|A1|C|2653
*
8T3D|1|A1|G|2754
8T3D|1|A1|C|2755
8T3D|1|A1|C|2756
8T3D|1|A1|U|2757
8T3D|1|A1|A|2758
8T3D|1|A1|U|2759
8T3D|1|A1|C|2760
8T3D|1|A1|G|2761
8T3D|1|A1|A|2762
8T3D|1|A1|U|2763
8T3D|1|A1|C|2764
8T3D|1|A1|C|2765
*
8T3D|1|A1|G|2793
8T3D|1|A1|G|2794
8T3D|1|A1|U|2795
8T3D|1|A1|G|2796
8T3D|1|A1|C|2797
8T3D|1|A1|C|2798
8T3D|1|A1|A|2799
8T3D|1|A1|G|2800
8T3D|1|A1|A|2801
8T3D|1|A1|A|2802
8T3D|1|A1|A|2803
8T3D|1|A1|A|2804

Current chains

Chain A1
25S rRNA

Nearby chains

Chain AA
60S ribosomal protein L2-A
Chain AN
60S ribosomal protein L15-A
Chain AQ
60S ribosomal protein L18-A
Chain AT
60S ribosomal protein L21-A
Chain Aa
60S ribosomal protein L28
Chain Ab
RPL29 isoform 1
Chain Ao
60S ribosomal protein L42-A

Coloring options:

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