J6_8T5D_001

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8T5D|1|B|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T5D|1|B|G|45
8T5D|1|B|G|46
*
8T5D|1|B|C|179
8T5D|1|B|G|180
8T5D|1|B|A|181
8T5D|1|B|A|182
8T5D|1|B|C|183
*
8T5D|1|B|G|214
8T5D|1|B|G|215
8T5D|1|B|A|216
8T5D|1|B|A|217
8T5D|1|B|A|218
8T5D|1|B|A|219
8T5D|1|B|G|220
8T5D|1|B|A|221
8T5D|1|B|A|222
8T5D|1|B|A|223
8T5D|1|B|U|224
*
8T5D|1|B|A|231
8T5D|1|B|G|232
8T5D|1|B|A|233
8T5D|1|B|U|234
8T5D|1|B|U|235
*
8T5D|1|B|A|262
8T5D|1|B|G|263
8T5D|1|B|C|264
8T5D|1|B|A|265
8T5D|1|B|G|266
*
8T5D|1|B|C|426
8T5D|1|B|U|427
8T5D|1|B|A|428
8T5D|1|B|A|429
8T5D|1|B|A|430
8T5D|1|B|U|431
8T5D|1|B|A|432
8T5D|1|B|C|433

Current chains

Chain B

23S RNA

Nearby chains

Chain 2

50S ribosomal protein L34