J6_8T8B_001

3D structure

PDB id

8T8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MAI-tripeptidyl-tRNA analog ACCA-IAMf at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

8T8B|1|1A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T8B|1|1A|G|44
8T8B|1|1A|C|45
*
8T8B|1|1A|G|179
8T8B|1|1A|G|180
8T8B|1|1A|A|181
8T8B|1|1A|A|182
8T8B|1|1A|C|183
*
8T8B|1|1A|G|214
8T8B|1|1A|G|215
8T8B|1|1A|A|216
8T8B|1|1A|G|217
8T8B|1|1A|A|218
8T8B|1|1A|G|219
8T8B|1|1A|G|220
8T8B|1|1A|A|221
8T8B|1|1A|A|222
8T8B|1|1A|A|223
8T8B|1|1A|G|224
*
8T8B|1|1A|C|231
8T8B|1|1A|G|232
8T8B|1|1A|A|233
8T8B|1|1A|C|234
8T8B|1|1A|U|235
*
8T8B|1|1A|A|262
8T8B|1|1A|C|263
8T8B|1|1A|C|264
8T8B|1|1A|A|265
8T8B|1|1A|G|266
*
8T8B|1|1A|C|426
8T8B|1|1A|U|427
8T8B|1|1A|A|428
8T8B|1|1A|A|429
8T8B|1|1A|G|430
8T8B|1|1A|U|431
8T8B|1|1A|A|432
8T8B|1|1A|C|433

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34