J6_8T8C_003

3D structure

PDB id

8T8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MFI-tripeptidyl-tRNA analog ACCA-IFMf at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

8T8C|1|2A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T8C|1|2A|G|44
8T8C|1|2A|C|45
*
8T8C|1|2A|G|179
8T8C|1|2A|G|180
8T8C|1|2A|A|181
8T8C|1|2A|A|182
8T8C|1|2A|C|183
*
8T8C|1|2A|G|214
8T8C|1|2A|G|215
8T8C|1|2A|A|216
8T8C|1|2A|G|217
8T8C|1|2A|A|218
8T8C|1|2A|G|219
8T8C|1|2A|G|220
8T8C|1|2A|A|221
8T8C|1|2A|A|222
8T8C|1|2A|A|223
8T8C|1|2A|G|224
*
8T8C|1|2A|C|231
8T8C|1|2A|G|232
8T8C|1|2A|A|233
8T8C|1|2A|C|234
8T8C|1|2A|U|235
*
8T8C|1|2A|A|262
8T8C|1|2A|C|263
8T8C|1|2A|C|264
8T8C|1|2A|A|265
8T8C|1|2A|G|266
*
8T8C|1|2A|C|426
8T8C|1|2A|U|427
8T8C|1|2A|A|428
8T8C|1|2A|A|429
8T8C|1|2A|G|430
8T8C|1|2A|U|431
8T8C|1|2A|A|432
8T8C|1|2A|C|433

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34