J6_8UD7_003

3D structure

PDB id

8UD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

8UD7|1|2A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UD7|1|2A|G|44
8UD7|1|2A|C|45
*
8UD7|1|2A|G|179
8UD7|1|2A|G|180
8UD7|1|2A|A|181
8UD7|1|2A|A|182
8UD7|1|2A|C|183
*
8UD7|1|2A|G|214
8UD7|1|2A|G|215
8UD7|1|2A|A|216
8UD7|1|2A|G|217
8UD7|1|2A|A|218
8UD7|1|2A|G|219
8UD7|1|2A|G|220
8UD7|1|2A|A|221
8UD7|1|2A|A|222
8UD7|1|2A|A|223
8UD7|1|2A|G|224
*
8UD7|1|2A|C|231
8UD7|1|2A|G|232
8UD7|1|2A|A|233
8UD7|1|2A|C|234
8UD7|1|2A|U|235
*
8UD7|1|2A|A|262
8UD7|1|2A|C|263
8UD7|1|2A|C|264
8UD7|1|2A|A|265
8UD7|1|2A|G|266
*
8UD7|1|2A|C|426
8UD7|1|2A|U|427
8UD7|1|2A|A|428
8UD7|1|2A|A|429
8UD7|1|2A|G|430
8UD7|1|2A|U|431
8UD7|1|2A|A|432
8UD7|1|2A|C|433

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34