J6_8UD8_001
3D structure
- PDB id
- 8UD8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC
- Length
- 36 nucleotides
- Bulged bases
- 8UD8|1|1A|A|223
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8UD8|1|1A|G|44
8UD8|1|1A|C|45
*
8UD8|1|1A|G|179
8UD8|1|1A|G|180
8UD8|1|1A|A|181
8UD8|1|1A|A|182
8UD8|1|1A|C|183
*
8UD8|1|1A|G|214
8UD8|1|1A|G|215
8UD8|1|1A|A|216
8UD8|1|1A|G|217
8UD8|1|1A|A|218
8UD8|1|1A|G|219
8UD8|1|1A|G|220
8UD8|1|1A|A|221
8UD8|1|1A|A|222
8UD8|1|1A|A|223
8UD8|1|1A|G|224
*
8UD8|1|1A|C|231
8UD8|1|1A|G|232
8UD8|1|1A|A|233
8UD8|1|1A|C|234
8UD8|1|1A|U|235
*
8UD8|1|1A|A|262
8UD8|1|1A|C|263
8UD8|1|1A|C|264
8UD8|1|1A|A|265
8UD8|1|1A|G|266
*
8UD8|1|1A|C|426
8UD8|1|1A|U|427
8UD8|1|1A|A|428
8UD8|1|1A|A|429
8UD8|1|1A|G|430
8UD8|1|1A|U|431
8UD8|1|1A|A|432
8UD8|1|1A|C|433
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 17
- 50S ribosomal protein L34
Coloring options: