3D structure

PDB id
8UIZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P-E state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.43 Å

Loop

Sequence
UUGA*UUUG*CA*UGUC*GCCUCACGAUCC*GGUGUCAGAAAA
Length
38 nucleotides
Bulged bases
8UIZ|1|L5|G|3922, 8UIZ|1|L5|C|4337, 8UIZ|1|L5|A|4376, 8UIZ|1|L5|A|4378, 8UIZ|1|L5|A|4379
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8UIZ|1|L5|U|3920
8UIZ|1|L5|U|3921
8UIZ|1|L5|G|3922
8UIZ|1|L5|A|3923
*
8UIZ|1|L5|U|4188
8UIZ|1|L5|U|4189
8UIZ|1|L5|U|4190
8UIZ|1|L5|G|4191
*
8UIZ|1|L5|C|4204
8UIZ|1|L5|A|4205
*
8UIZ|1|L5|U|4227
8UIZ|1|L5|G|4228
8UIZ|1|L5|U|4229
8UIZ|1|L5|C|4230
*
8UIZ|1|L5|G|4331
8UIZ|1|L5|C|4332
8UIZ|1|L5|C|4333
8UIZ|1|L5|U|4334
8UIZ|1|L5|C|4335
8UIZ|1|L5|A|4336
8UIZ|1|L5|C|4337
8UIZ|1|L5|G|4338
8UIZ|1|L5|A|4339
8UIZ|1|L5|U|4340
8UIZ|1|L5|C|4341
8UIZ|1|L5|C|4342
*
8UIZ|1|L5|G|4370
8UIZ|1|L5|G|4371
8UIZ|1|L5|U|4372
8UIZ|1|L5|G|4373
8UIZ|1|L5|U|4374
8UIZ|1|L5|C|4375
8UIZ|1|L5|A|4376
8UIZ|1|L5|G|4377
8UIZ|1|L5|A|4378
8UIZ|1|L5|A|4379
8UIZ|1|L5|A|4380
8UIZ|1|L5|A|4381

Current chains

Chain L5
28S rRNA

Nearby chains

Chain Et
Transfer RNA; tRNA
Chain LA
60S ribosomal protein L8
Chain LN
60S ribosomal protein L15
Chain LQ
60S ribosomal protein L18
Chain LT
60S ribosomal protein L21
Chain La
60S ribosomal protein L27a
Chain Lb
Large ribosomal subunit protein eL29
Chain Lo
60S ribosomal protein L36a

Coloring options:

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