3D structure

PDB id
8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.64 Å

Loop

Sequence
CGAG*CGCAA*UGAAG*CGAG*CGG*CACGAG
Length
27 nucleotides
Bulged bases
8UJ9|1|L5|C|1501, 8UJ9|1|L5|G|1502
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8UJ9|1|L5|C|1352
8UJ9|1|L5|G|1353
8UJ9|1|L5|A|1354
8UJ9|1|L5|G|1355
*
8UJ9|1|L5|C|1384
8UJ9|1|L5|G|1385
8UJ9|1|L5|C|1386
8UJ9|1|L5|A|1387
8UJ9|1|L5|A|1388
*
8UJ9|1|L5|U|1395
8UJ9|1|L5|G|1396
8UJ9|1|L5|A|1397
8UJ9|1|L5|A|1398
8UJ9|1|L5|G|1399
*
8UJ9|1|L5|C|1418
8UJ9|1|L5|G|1419
8UJ9|1|L5|A|1420
8UJ9|1|L5|G|1421
*
8UJ9|1|L5|C|1464
8UJ9|1|L5|G|1465
8UJ9|1|L5|G|1466
*
8UJ9|1|L5|C|1499
8UJ9|1|L5|A|1500
8UJ9|1|L5|C|1501
8UJ9|1|L5|G|1502
8UJ9|1|L5|A|1503
8UJ9|1|L5|G|1504

Current chains

Chain L5
28S rRNA [Homo sapiens]

Nearby chains

Chain LC
60S ribosomal protein L4
Chain LL
Large ribosomal subunit protein eL13
Chain LQ
60S ribosomal protein L18
Chain La
60S ribosomal protein L27a
Chain Lb
Large ribosomal subunit protein eL29
Chain Li
60S ribosomal protein L36

Coloring options:

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