3D structure

PDB id
8UJD (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human 60S ribosome with eIF6
Experimental method
ELECTRON MICROSCOPY
Resolution
2.96 Å

Loop

Sequence
GGCGAC*GGAGAAGAAAC*GGAUU*AAGAG*CUAAAUAC*GUC
Length
38 nucleotides
Bulged bases
8UJD|1|L5|A|66, 8UJD|1|L8|U|34
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8UJD|1|L5|G|21
8UJD|1|L5|G|22
8UJD|1|L5|C|23
8UJD|1|L5|G|24
8UJD|1|L5|A|25
8UJD|1|L5|C|26
*
8UJD|1|L5|G|57
8UJD|1|L5|G|58
8UJD|1|L5|A|59
8UJD|1|L5|G|60
8UJD|1|L5|A|61
8UJD|1|L5|A|62
8UJD|1|L5|G|63
8UJD|1|L5|A|64
8UJD|1|L5|A|65
8UJD|1|L5|A|66
8UJD|1|L5|C|67
*
8UJD|1|L5|G|74
8UJD|1|L5|G|75
8UJD|1|L5|A|76
8UJD|1|L5|U|77
8UJD|1|L5|U|78
*
8UJD|1|L5|A|105
8UJD|1|L5|A|106
8UJD|1|L5|G|107
8UJD|1|L5|A|108
8UJD|1|L5|G|109
*
8UJD|1|L5|C|332
8UJD|1|L5|U|333
8UJD|1|L5|A|334
8UJD|1|L5|A|335
8UJD|1|L5|A|336
8UJD|1|L5|U|337
8UJD|1|L5|A|338
8UJD|1|L5|C|339
*
8UJD|1|L8|G|33
8UJD|1|L8|U|34
8UJD|1|L8|C|35

Current chains

Chain L5
28S rRNA
Chain L8
5.8S rRNA [Homo sapiens]

Nearby chains

Chain LL
Large ribosomal subunit protein eL13
Chain LN
60S ribosomal protein L15
Chain Lh
60S ribosomal protein L35
Chain Li
60S ribosomal protein L36
Chain Lj
60S ribosomal protein L37

Coloring options:

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