J6_8UQL_001

3D structure

PDB id

8UQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8UQL|1|a|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UQL|1|a|G|45
8UQL|1|a|G|46
*
8UQL|1|a|C|179
8UQL|1|a|G|180
8UQL|1|a|A|181
8UQL|1|a|A|182
8UQL|1|a|C|183
*
8UQL|1|a|G|214
8UQL|1|a|G|215
8UQL|1|a|A|216
8UQL|1|a|A|217
8UQL|1|a|A|218
8UQL|1|a|A|219
8UQL|1|a|G|220
8UQL|1|a|A|221
8UQL|1|a|A|222
8UQL|1|a|A|223
8UQL|1|a|U|224
*
8UQL|1|a|A|231
8UQL|1|a|G|232
8UQL|1|a|A|233
8UQL|1|a|U|234
8UQL|1|a|U|235
*
8UQL|1|a|A|262
8UQL|1|a|G|263
8UQL|1|a|C|264
8UQL|1|a|A|265
8UQL|1|a|G|266
*
8UQL|1|a|C|426
8UQL|1|a|U|427
8UQL|1|a|A|428
8UQL|1|a|A|429
8UQL|1|a|A|430
8UQL|1|a|U|431
8UQL|1|a|A|432
8UQL|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34