J6_8UQP_001

3D structure

PDB id

8UQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8UQP|1|a|A|223

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UQP|1|a|G|45
8UQP|1|a|G|46
*
8UQP|1|a|C|179
8UQP|1|a|G|180
8UQP|1|a|A|181
8UQP|1|a|A|182
8UQP|1|a|C|183
*
8UQP|1|a|G|214
8UQP|1|a|G|215
8UQP|1|a|A|216
8UQP|1|a|A|217
8UQP|1|a|A|218
8UQP|1|a|A|219
8UQP|1|a|G|220
8UQP|1|a|A|221
8UQP|1|a|A|222
8UQP|1|a|A|223
8UQP|1|a|U|224
*
8UQP|1|a|A|231
8UQP|1|a|G|232
8UQP|1|a|A|233
8UQP|1|a|U|234
8UQP|1|a|U|235
*
8UQP|1|a|A|262
8UQP|1|a|G|263
8UQP|1|a|C|264
8UQP|1|a|A|265
8UQP|1|a|G|266
*
8UQP|1|a|C|426
8UQP|1|a|U|427
8UQP|1|a|A|428
8UQP|1|a|A|429
8UQP|1|a|A|430
8UQP|1|a|U|431
8UQP|1|a|A|432
8UQP|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34