J6_8UU9_001

3D structure

PDB id

8UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GC*GCAGAC*GGAAGAGAAAG*CGAUU*AAGAG*CUAAAUAC

Length

37 nucleotides

Bulged bases

8UU9|1|A|G|183, 8UU9|1|A|A|225

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UU9|1|A|G|45
8UU9|1|A|C|46
*
8UU9|1|A|G|180
8UU9|1|A|C|181
8UU9|1|A|A|182
8UU9|1|A|G|183
8UU9|1|A|A|184
8UU9|1|A|C|185
*
8UU9|1|A|G|216
8UU9|1|A|G|217
8UU9|1|A|A|218
8UU9|1|A|A|219
8UU9|1|A|G|220
8UU9|1|A|A|221
8UU9|1|A|G|222
8UU9|1|A|A|223
8UU9|1|A|A|224
8UU9|1|A|A|225
8UU9|1|A|G|226
*
8UU9|1|A|C|233
8UU9|1|A|G|234
8UU9|1|A|A|235
8UU9|1|A|U|236
8UU9|1|A|U|237
*
8UU9|1|A|A|264
8UU9|1|A|A|265
8UU9|1|A|G|266
8UU9|1|A|A|267
8UU9|1|A|G|268
*
8UU9|1|A|C|472
8UU9|1|A|U|473
8UU9|1|A|A|474
8UU9|1|A|A|475
8UU9|1|A|A|476
8UU9|1|A|U|477
8UU9|1|A|A|478
8UU9|1|A|C|479

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

Large ribosomal subunit protein bL34

Chain E

Large ribosomal subunit protein uL4