J6_8UU9_002
3D structure
- PDB id
- 8UU9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUA*UUUG*CG*CGCC*GCUUAGUGAUCC*GCUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 8UU9|1|A|U|2109, 8UU9|1|A|U|2423, 8UU9|1|A|G|2461, 8UU9|1|A|A|2463, 8UU9|1|A|U|2464
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8UU9|1|A|U|2107
8UU9|1|A|U|2108
8UU9|1|A|U|2109
8UU9|1|A|A|2110
*
8UU9|1|A|U|2276
8UU9|1|A|U|2277
8UU9|1|A|U|2278
8UU9|1|A|G|2279
*
8UU9|1|A|C|2291
8UU9|1|A|G|2292
*
8UU9|1|A|C|2314
8UU9|1|A|G|2315
8UU9|1|A|C|2316
8UU9|1|A|C|2317
*
8UU9|1|A|G|2417
8UU9|1|A|C|2418
8UU9|1|A|U|2419
8UU9|1|A|U|2420
8UU9|1|A|A|2421
8UU9|1|A|G|2422
8UU9|1|A|U|2423
8UU9|1|A|G|2424
8UU9|1|A|A|2425
8UU9|1|A|U|2426
8UU9|1|A|C|2427
8UU9|1|A|C|2428
*
8UU9|1|A|G|2454
8UU9|1|A|C|2455
8UU9|1|A|U|2456
8UU9|1|A|C|2457
8UU9|1|A|A|2458
8UU9|1|A|A|2459
8UU9|1|A|C|2460
8UU9|1|A|G|2461
8UU9|1|A|G|2462
8UU9|1|A|A|2463
8UU9|1|A|U|2464
8UU9|1|A|A|2465
8UU9|1|A|A|2466
8UU9|1|A|A|2467
8UU9|1|A|A|2468
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 5
- Large ribosomal subunit protein bL33
- Chain 7
- Large ribosomal subunit protein bL35
- Chain C
- Large ribosomal subunit protein uL2
- Chain N
- Large ribosomal subunit protein uL15
- Chain Y
- Large ribosomal subunit protein bL27
- Chain Z
- Large ribosomal subunit protein bL28
- Chain x
- Transfer RNA; tRNA
Coloring options: