J6_8UVR_003

3D structure

PDB id

8UVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

8UVR|1|2A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UVR|1|2A|G|44
8UVR|1|2A|C|45
*
8UVR|1|2A|G|179
8UVR|1|2A|G|180
8UVR|1|2A|A|181
8UVR|1|2A|A|182
8UVR|1|2A|C|183
*
8UVR|1|2A|G|214
8UVR|1|2A|G|215
8UVR|1|2A|A|216
8UVR|1|2A|G|217
8UVR|1|2A|A|218
8UVR|1|2A|G|219
8UVR|1|2A|G|220
8UVR|1|2A|A|221
8UVR|1|2A|A|222
8UVR|1|2A|A|223
8UVR|1|2A|G|224
*
8UVR|1|2A|C|231
8UVR|1|2A|G|232
8UVR|1|2A|A|233
8UVR|1|2A|C|234
8UVR|1|2A|U|235
*
8UVR|1|2A|A|262
8UVR|1|2A|C|263
8UVR|1|2A|C|264
8UVR|1|2A|A|265
8UVR|1|2A|G|266
*
8UVR|1|2A|C|426
8UVR|1|2A|U|427
8UVR|1|2A|A|428
8UVR|1|2A|A|429
8UVR|1|2A|G|430
8UVR|1|2A|U|431
8UVR|1|2A|A|432
8UVR|1|2A|C|433

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34