J6_8UXA_001
3D structure
- PDB id
- 8UXA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAUAAA*UAAAUUG*UAGUAAUAGAUAAAAAUAUG*CGAUAAU*AGU*AUG
- Length
- 46 nucleotides
- Bulged bases
- 8UXA|1|A|A|2316, 8UXA|1|A|U|2424, 8UXA|1|A|A|2425, 8UXA|1|A|A|2426, 8UXA|1|A|U|2427, 8UXA|1|A|A|2428, 8UXA|1|A|A|2430, 8UXA|1|A|A|2432, 8UXA|1|A|A|2433, 8UXA|1|A|A|2438
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8UXA|1|A|C|2312
8UXA|1|A|A|2313
8UXA|1|A|U|2314
8UXA|1|A|A|2315
8UXA|1|A|A|2316
8UXA|1|A|A|2317
*
8UXA|1|A|U|2375
8UXA|1|A|A|2376
8UXA|1|A|A|2377
8UXA|1|A|A|2378
8UXA|1|A|U|2379
8UXA|1|A|U|2380
8UXA|1|A|G|2381
*
8UXA|1|A|U|2421
8UXA|1|A|A|2422
8UXA|1|A|G|2423
8UXA|1|A|U|2424
8UXA|1|A|A|2425
8UXA|1|A|A|2426
8UXA|1|A|U|2427
8UXA|1|A|A|2428
8UXA|1|A|G|2429
8UXA|1|A|A|2430
8UXA|1|A|U|2431
8UXA|1|A|A|2432
8UXA|1|A|A|2433
8UXA|1|A|A|2434
8UXA|1|A|A|2435
8UXA|1|A|A|2436
8UXA|1|A|U|2437
8UXA|1|A|A|2438
8UXA|1|A|U|2439
8UXA|1|A|G|2440
*
8UXA|1|A|C|2608
8UXA|1|A|G|2609
8UXA|1|A|A|2610
8UXA|1|A|U|2611
8UXA|1|A|A|2612
8UXA|1|A|A|2613
8UXA|1|A|U|2614
*
8UXA|1|A|A|2637
8UXA|1|A|G|2638
8UXA|1|A|U|2639
*
8UXA|1|A|A|2648
8UXA|1|A|U|2649
8UXA|1|A|G|2650
Current chains
- Chain A
- Large ribosomal subunit rRNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein mL38
- Chain 2
- Large ribosomal subunit protein mL40
- Chain 6
- Large ribosomal subunit protein mL46
- Chain AM
- Transfer RNA; tRNA
- Chain E
- Large ribosomal subunit protein uL5m
- Chain R
- Large ribosomal subunit protein bL27m
- Chain V
- Large ribosomal subunit protein bL31m
- Chain X
- Large ribosomal subunit protein bL33m
- Chain b
- Large ribosomal subunit protein mL59
Coloring options: