J6_8V84_001
3D structure
- PDB id
- 8V84 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 8V84|1|1|A|67, 8V84|1|1|U|329, 8V84|1|2|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8V84|1|1|G|22
8V84|1|1|A|23
8V84|1|1|G|24
8V84|1|1|U|25
8V84|1|1|A|26
8V84|1|1|C|27
*
8V84|1|1|G|58
8V84|1|1|G|59
8V84|1|1|A|60
8V84|1|1|A|61
8V84|1|1|A|62
8V84|1|1|A|63
8V84|1|1|G|64
8V84|1|1|A|65
8V84|1|1|A|66
8V84|1|1|A|67
8V84|1|1|C|68
*
8V84|1|1|G|75
8V84|1|1|G|76
8V84|1|1|A|77
8V84|1|1|U|78
8V84|1|1|U|79
*
8V84|1|1|A|106
8V84|1|1|A|107
8V84|1|1|A|108
8V84|1|1|A|109
8V84|1|1|G|110
*
8V84|1|1|C|321
8V84|1|1|U|322
8V84|1|1|A|323
8V84|1|1|A|324
8V84|1|1|A|325
8V84|1|1|U|326
8V84|1|1|A|327
8V84|1|1|U|328
8V84|1|1|U|329
8V84|1|1|G|330
8V84|1|1|G|331
*
8V84|1|2|C|32
8V84|1|2|A|33
8V84|1|2|U|34
8V84|1|2|C|35
Current chains
- Chain 1
- Saccharomyces cerevisiae 25S ribosomal RNA
- Chain 2
- Saccharomyces cerevisiae 5.8S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- Large ribosomal subunit protein eL15A
- Chain h
- 60S ribosomal protein L35-A
- Chain i
- 60S ribosomal protein L36-A
- Chain j
- 60S ribosomal protein L37-A
- Chain v
- Nucleolar protein 16
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