J6_8VIO_001

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GC*GGAAC*GGAAGAGAAAA*UGAUU*AGGAUG*CUGAAUAC

Length

37 nucleotides

Bulged bases

8VIO|1|A|A|222, 8VIO|1|A|U|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VIO|1|A|G|42
8VIO|1|A|C|43
*
8VIO|1|A|G|178
8VIO|1|A|G|179
8VIO|1|A|A|180
8VIO|1|A|A|181
8VIO|1|A|C|182
*
8VIO|1|A|G|213
8VIO|1|A|G|214
8VIO|1|A|A|215
8VIO|1|A|A|216
8VIO|1|A|G|217
8VIO|1|A|A|218
8VIO|1|A|G|219
8VIO|1|A|A|220
8VIO|1|A|A|221
8VIO|1|A|A|222
8VIO|1|A|A|223
*
8VIO|1|A|U|231
8VIO|1|A|G|232
8VIO|1|A|A|233
8VIO|1|A|U|234
8VIO|1|A|U|235
*
8VIO|1|A|A|262
8VIO|1|A|G|263
8VIO|1|A|G|264
8VIO|1|A|A|265
8VIO|1|A|U|266
8VIO|1|A|G|267
*
8VIO|1|A|C|514
8VIO|1|A|U|515
8VIO|1|A|G|516
8VIO|1|A|A|517
8VIO|1|A|A|518
8VIO|1|A|U|519
8VIO|1|A|A|520
8VIO|1|A|C|521

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L34