J6_8VK0_001

3D structure

PDB id

8VK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

GC*GGAAC*GGAAGAGAAAA*UGAUU*AGGAUG*CUGAAUAC

Length

37 nucleotides

Bulged bases

8VK0|1|A|A|222, 8VK0|1|A|U|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VK0|1|A|G|42
8VK0|1|A|C|43
*
8VK0|1|A|G|178
8VK0|1|A|G|179
8VK0|1|A|A|180
8VK0|1|A|A|181
8VK0|1|A|C|182
*
8VK0|1|A|G|213
8VK0|1|A|G|214
8VK0|1|A|A|215
8VK0|1|A|A|216
8VK0|1|A|G|217
8VK0|1|A|A|218
8VK0|1|A|G|219
8VK0|1|A|A|220
8VK0|1|A|A|221
8VK0|1|A|A|222
8VK0|1|A|A|223
*
8VK0|1|A|U|231
8VK0|1|A|G|232
8VK0|1|A|A|233
8VK0|1|A|U|234
8VK0|1|A|U|235
*
8VK0|1|A|A|262
8VK0|1|A|G|263
8VK0|1|A|G|264
8VK0|1|A|A|265
8VK0|1|A|U|266
8VK0|1|A|G|267
*
8VK0|1|A|C|514
8VK0|1|A|U|515
8VK0|1|A|G|516
8VK0|1|A|A|517
8VK0|1|A|A|518
8VK0|1|A|U|519
8VK0|1|A|A|520
8VK0|1|A|C|521

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L34