J6_8VKW_001

3D structure

PDB id

8VKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

GC*GGAAC*GGAAGAGAAAA*UGAUU*AGGAUG*CUGAAUAC

Length

37 nucleotides

Bulged bases

8VKW|1|A|A|222, 8VKW|1|A|U|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VKW|1|A|G|42
8VKW|1|A|C|43
*
8VKW|1|A|G|178
8VKW|1|A|G|179
8VKW|1|A|A|180
8VKW|1|A|A|181
8VKW|1|A|C|182
*
8VKW|1|A|G|213
8VKW|1|A|G|214
8VKW|1|A|A|215
8VKW|1|A|A|216
8VKW|1|A|G|217
8VKW|1|A|A|218
8VKW|1|A|G|219
8VKW|1|A|A|220
8VKW|1|A|A|221
8VKW|1|A|A|222
8VKW|1|A|A|223
*
8VKW|1|A|U|231
8VKW|1|A|G|232
8VKW|1|A|A|233
8VKW|1|A|U|234
8VKW|1|A|U|235
*
8VKW|1|A|A|262
8VKW|1|A|G|263
8VKW|1|A|G|264
8VKW|1|A|A|265
8VKW|1|A|U|266
8VKW|1|A|G|267
*
8VKW|1|A|C|514
8VKW|1|A|U|515
8VKW|1|A|G|516
8VKW|1|A|A|517
8VKW|1|A|A|518
8VKW|1|A|U|519
8VKW|1|A|A|520
8VKW|1|A|C|521

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L34