J6_8VL1_001

3D structure

PDB id

8VL1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 36 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8VL1|1|a|A|223

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VL1|1|a|G|45
8VL1|1|a|G|46
*
8VL1|1|a|C|179
8VL1|1|a|G|180
8VL1|1|a|A|181
8VL1|1|a|A|182
8VL1|1|a|C|183
*
8VL1|1|a|G|214
8VL1|1|a|G|215
8VL1|1|a|A|216
8VL1|1|a|A|217
8VL1|1|a|A|218
8VL1|1|a|A|219
8VL1|1|a|G|220
8VL1|1|a|A|221
8VL1|1|a|A|222
8VL1|1|a|A|223
8VL1|1|a|U|224
*
8VL1|1|a|A|231
8VL1|1|a|G|232
8VL1|1|a|A|233
8VL1|1|a|U|234
8VL1|1|a|U|235
*
8VL1|1|a|A|262
8VL1|1|a|G|263
8VL1|1|a|C|264
8VL1|1|a|A|265
8VL1|1|a|G|266
*
8VL1|1|a|C|426
8VL1|1|a|U|427
8VL1|1|a|A|428
8VL1|1|a|A|429
8VL1|1|a|A|430
8VL1|1|a|U|431
8VL1|1|a|A|432
8VL1|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34