J6_8VOO_001

3D structure

PDB id

8VOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8VOO|1|a|A|223

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOO|1|a|G|45
8VOO|1|a|G|46
*
8VOO|1|a|C|179
8VOO|1|a|G|180
8VOO|1|a|A|181
8VOO|1|a|A|182
8VOO|1|a|C|183
*
8VOO|1|a|G|214
8VOO|1|a|G|215
8VOO|1|a|A|216
8VOO|1|a|A|217
8VOO|1|a|A|218
8VOO|1|a|A|219
8VOO|1|a|G|220
8VOO|1|a|A|221
8VOO|1|a|A|222
8VOO|1|a|A|223
8VOO|1|a|U|224
*
8VOO|1|a|A|231
8VOO|1|a|G|232
8VOO|1|a|A|233
8VOO|1|a|U|234
8VOO|1|a|U|235
*
8VOO|1|a|A|262
8VOO|1|a|G|263
8VOO|1|a|C|264
8VOO|1|a|A|265
8VOO|1|a|G|266
*
8VOO|1|a|C|426
8VOO|1|a|U|427
8VOO|1|a|A|428
8VOO|1|a|A|429
8VOO|1|a|A|430
8VOO|1|a|U|431
8VOO|1|a|A|432
8VOO|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34