J6_8VOQ_001

3D structure

PDB id

8VOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.3 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8VOQ|1|a|A|223

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOQ|1|a|G|45
8VOQ|1|a|G|46
*
8VOQ|1|a|C|179
8VOQ|1|a|G|180
8VOQ|1|a|A|181
8VOQ|1|a|A|182
8VOQ|1|a|C|183
*
8VOQ|1|a|G|214
8VOQ|1|a|G|215
8VOQ|1|a|A|216
8VOQ|1|a|A|217
8VOQ|1|a|A|218
8VOQ|1|a|A|219
8VOQ|1|a|G|220
8VOQ|1|a|A|221
8VOQ|1|a|A|222
8VOQ|1|a|A|223
8VOQ|1|a|U|224
*
8VOQ|1|a|A|231
8VOQ|1|a|G|232
8VOQ|1|a|A|233
8VOQ|1|a|U|234
8VOQ|1|a|U|235
*
8VOQ|1|a|A|262
8VOQ|1|a|G|263
8VOQ|1|a|C|264
8VOQ|1|a|A|265
8VOQ|1|a|G|266
*
8VOQ|1|a|C|426
8VOQ|1|a|U|427
8VOQ|1|a|A|428
8VOQ|1|a|A|429
8VOQ|1|a|A|430
8VOQ|1|a|U|431
8VOQ|1|a|A|432
8VOQ|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34