J6_8VOS_001

3D structure

PDB id

8VOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 60 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8VOS|1|a|A|223

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOS|1|a|G|45
8VOS|1|a|G|46
*
8VOS|1|a|C|179
8VOS|1|a|G|180
8VOS|1|a|A|181
8VOS|1|a|A|182
8VOS|1|a|C|183
*
8VOS|1|a|G|214
8VOS|1|a|G|215
8VOS|1|a|A|216
8VOS|1|a|A|217
8VOS|1|a|A|218
8VOS|1|a|A|219
8VOS|1|a|G|220
8VOS|1|a|A|221
8VOS|1|a|A|222
8VOS|1|a|A|223
8VOS|1|a|U|224
*
8VOS|1|a|A|231
8VOS|1|a|G|232
8VOS|1|a|A|233
8VOS|1|a|U|234
8VOS|1|a|U|235
*
8VOS|1|a|A|262
8VOS|1|a|G|263
8VOS|1|a|C|264
8VOS|1|a|A|265
8VOS|1|a|G|266
*
8VOS|1|a|C|426
8VOS|1|a|U|427
8VOS|1|a|A|428
8VOS|1|a|A|429
8VOS|1|a|A|430
8VOS|1|a|U|431
8VOS|1|a|A|432
8VOS|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34