J6_8VPK_001
3D structure
- PDB id
- 8VPK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- GC*GGAAC*GGAAGAGAAAA*UGAUU*AGGAUG*CUGAAUAC
- Length
- 37 nucleotides
- Bulged bases
- 8VPK|1|A|A|222, 8VPK|1|A|U|266
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VPK|1|A|G|42
8VPK|1|A|C|43
*
8VPK|1|A|G|178
8VPK|1|A|G|179
8VPK|1|A|A|180
8VPK|1|A|A|181
8VPK|1|A|C|182
*
8VPK|1|A|G|213
8VPK|1|A|G|214
8VPK|1|A|A|215
8VPK|1|A|A|216
8VPK|1|A|G|217
8VPK|1|A|A|218
8VPK|1|A|G|219
8VPK|1|A|A|220
8VPK|1|A|A|221
8VPK|1|A|A|222
8VPK|1|A|A|223
*
8VPK|1|A|U|231
8VPK|1|A|G|232
8VPK|1|A|A|233
8VPK|1|A|U|234
8VPK|1|A|U|235
*
8VPK|1|A|A|262
8VPK|1|A|G|263
8VPK|1|A|G|264
8VPK|1|A|A|265
8VPK|1|A|U|266
8VPK|1|A|G|267
*
8VPK|1|A|C|514
8VPK|1|A|U|515
8VPK|1|A|G|516
8VPK|1|A|A|517
8VPK|1|A|A|518
8VPK|1|A|U|519
8VPK|1|A|A|520
8VPK|1|A|C|521
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain d
- 50S ribosomal protein L34
Coloring options: