J6_8VSA_001

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8VSA|1|23S|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VSA|1|23S|G|45
8VSA|1|23S|G|46
*
8VSA|1|23S|C|179
8VSA|1|23S|G|180
8VSA|1|23S|A|181
8VSA|1|23S|A|182
8VSA|1|23S|C|183
*
8VSA|1|23S|G|214
8VSA|1|23S|G|215
8VSA|1|23S|A|216
8VSA|1|23S|A|217
8VSA|1|23S|A|218
8VSA|1|23S|A|219
8VSA|1|23S|G|220
8VSA|1|23S|A|221
8VSA|1|23S|A|222
8VSA|1|23S|A|223
8VSA|1|23S|U|224
*
8VSA|1|23S|A|231
8VSA|1|23S|G|232
8VSA|1|23S|A|233
8VSA|1|23S|U|234
8VSA|1|23S|U|235
*
8VSA|1|23S|A|262
8VSA|1|23S|G|263
8VSA|1|23S|C|264
8VSA|1|23S|A|265
8VSA|1|23S|G|266
*
8VSA|1|23S|C|426
8VSA|1|23S|U|427
8VSA|1|23S|A|428
8VSA|1|23S|A|429
8VSA|1|23S|A|430
8VSA|1|23S|U|431
8VSA|1|23S|A|432
8VSA|1|23S|C|433

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L34

50S ribosomal protein L34