Loop J6_8VSA

3D structure

PDB id: 8VSA (explore in PDB, NAKB, or RNA 3D Hub)
Description: Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å

Loop

Sequence: UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA
Length: 41 nucleotides
Bulged bases: 8VSA|1|23S|U|2076, 8VSA|1|23S|A|2388, 8VSA|1|23S|U|2390, 8VSA|1|23S|G|2428, 8VSA|1|23S|A|2430, 8VSA|1|23S|U|2431
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8VSA|1|23S|U|2074
8VSA|1|23S|U|2075
8VSA|1|23S|U|2076
8VSA|1|23S|A|2077
*
8VSA|1|23S|U|2243
8VSA|1|23S|U|2244
8VSA|1|23S|U|2245
8VSA|1|23S|G|2246
*
8VSA|1|23S|C|2258
8VSA|1|23S|U|2259
*
8VSA|1|23S|A|2281
8VSA|1|23S|G|2282
8VSA|1|23S|C|2283
8VSA|1|23S|A|2284
*
8VSA|1|23S|U|2384
8VSA|1|23S|C|2385
8VSA|1|23S|A|2386
8VSA|1|23S|U|2387
8VSA|1|23S|A|2388
8VSA|1|23S|G|2389
8VSA|1|23S|U|2390
8VSA|1|23S|G|2391
8VSA|1|23S|A|2392
8VSA|1|23S|U|2393
8VSA|1|23S|C|2394
8VSA|1|23S|C|2395
*
8VSA|1|23S|G|2421
8VSA|1|23S|C|2422
8VSA|1|23S|U|2423
8VSA|1|23S|C|2424
8VSA|1|23S|A|2425
8VSA|1|23S|A|2426
8VSA|1|23S|C|2427
8VSA|1|23S|G|2428
8VSA|1|23S|G|2429
8VSA|1|23S|A|2430
8VSA|1|23S|U|2431
8VSA|1|23S|A|2432
8VSA|1|23S|A|2433
8VSA|1|23S|A|2434
8VSA|1|23S|A|2435

Current chains

Chain 23S: 23S ribosomal RNA

Nearby chains

Chain L02: 50S ribosomal protein L2
Chain L15: 50S ribosomal protein L15
Chain L27: 50S ribosomal protein L27
Chain L28: 50S ribosomal protein L28
Chain L33: Large ribosomal subunit protein bL33
Chain L35: 50S ribosomal protein L35

J6_8VSA_002