J6_8VTW_003

3D structure

PDB id

8VTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

8VTW|1|2A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VTW|1|2A|G|44
8VTW|1|2A|C|45
*
8VTW|1|2A|G|179
8VTW|1|2A|G|180
8VTW|1|2A|A|181
8VTW|1|2A|A|182
8VTW|1|2A|C|183
*
8VTW|1|2A|G|214
8VTW|1|2A|G|215
8VTW|1|2A|A|216
8VTW|1|2A|G|217
8VTW|1|2A|A|218
8VTW|1|2A|G|219
8VTW|1|2A|G|220
8VTW|1|2A|A|221
8VTW|1|2A|A|222
8VTW|1|2A|A|223
8VTW|1|2A|G|224
*
8VTW|1|2A|C|231
8VTW|1|2A|G|232
8VTW|1|2A|A|233
8VTW|1|2A|C|234
8VTW|1|2A|U|235
*
8VTW|1|2A|A|262
8VTW|1|2A|C|263
8VTW|1|2A|C|264
8VTW|1|2A|A|265
8VTW|1|2A|G|266
*
8VTW|1|2A|C|426
8VTW|1|2A|U|427
8VTW|1|2A|A|428
8VTW|1|2A|A|429
8VTW|1|2A|G|430
8VTW|1|2A|U|431
8VTW|1|2A|A|432
8VTW|1|2A|C|433

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34