J6_8VTX_003

3D structure

PDB id

8VTX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with macrolone MCX-128, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

8VTX|1|2A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VTX|1|2A|G|44
8VTX|1|2A|C|45
*
8VTX|1|2A|G|179
8VTX|1|2A|G|180
8VTX|1|2A|A|181
8VTX|1|2A|A|182
8VTX|1|2A|C|183
*
8VTX|1|2A|G|214
8VTX|1|2A|G|215
8VTX|1|2A|A|216
8VTX|1|2A|G|217
8VTX|1|2A|A|218
8VTX|1|2A|G|219
8VTX|1|2A|G|220
8VTX|1|2A|A|221
8VTX|1|2A|A|222
8VTX|1|2A|A|223
8VTX|1|2A|G|224
*
8VTX|1|2A|C|231
8VTX|1|2A|G|232
8VTX|1|2A|A|233
8VTX|1|2A|C|234
8VTX|1|2A|U|235
*
8VTX|1|2A|A|262
8VTX|1|2A|C|263
8VTX|1|2A|C|264
8VTX|1|2A|A|265
8VTX|1|2A|G|266
*
8VTX|1|2A|C|426
8VTX|1|2A|U|427
8VTX|1|2A|A|428
8VTX|1|2A|A|429
8VTX|1|2A|G|430
8VTX|1|2A|U|431
8VTX|1|2A|A|432
8VTX|1|2A|C|433

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34