J6_8VVP_003
3D structure
- PDB id
- 8VVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUGA*UUUG*CA*UGUC*GCCUCACGAUCC*GGUGUCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 8VVP|1|WA|G|3924, 8VVP|1|WA|A|4378, 8VVP|1|WA|A|4380, 8VVP|1|WA|A|4381
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VVP|1|WA|U|3922
8VVP|1|WA|U|3923
8VVP|1|WA|G|3924
8VVP|1|WA|A|3925
*
8VVP|1|WA|U|4190
8VVP|1|WA|U|4191
8VVP|1|WA|U|4192
8VVP|1|WA|G|4193
*
8VVP|1|WA|C|4206
8VVP|1|WA|A|4207
*
8VVP|1|WA|U|4229
8VVP|1|WA|G|4230
8VVP|1|WA|U|4231
8VVP|1|WA|C|4232
*
8VVP|1|WA|G|4333
8VVP|1|WA|C|4334
8VVP|1|WA|C|4335
8VVP|1|WA|U|4336
8VVP|1|WA|C|4337
8VVP|1|WA|A|4338
8VVP|1|WA|C|4339
8VVP|1|WA|G|4340
8VVP|1|WA|A|4341
8VVP|1|WA|U|4342
8VVP|1|WA|C|4343
8VVP|1|WA|C|4344
*
8VVP|1|WA|G|4372
8VVP|1|WA|G|4373
8VVP|1|WA|U|4374
8VVP|1|WA|G|4375
8VVP|1|WA|U|4376
8VVP|1|WA|C|4377
8VVP|1|WA|A|4378
8VVP|1|WA|G|4379
8VVP|1|WA|A|4380
8VVP|1|WA|A|4381
8VVP|1|WA|A|4382
8VVP|1|WA|A|4383
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain A
- uL3
- Chain AA
- L29
- Chain M
- L15
- Chain NA
- eL42
- Chain P
- eL18
- Chain S
- eL21
- Chain SA
- Transfer RNA; tRNA
- Chain TA
- Transfer RNA; tRNA
- Chain Z
- L27a
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